DVT-0463
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
1,530,346,046
Polonies
95.1%
Q30
96.9%
Index Assignment
221.307
Assigned Yield (Gb)
8 + 8
Lane 1 (I1 + I2)
8 + 8
Lane 2 (I1 + I2)
0.27%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th PhiX_CB2 CACAGATC ACGAGAGT 4,625,169 0.3022
50th GAT-APP-L116-4 GACAGTAA GCGATTAC 137,386,274 8.9775
95th GAT-APP-L115-1 TGCTCGAC ATCCTTAA 176,941,577 11.5622
All Indices
# Sample I1 I2 Polonies % Polonies
1 GAT-APP-L115-1 TGCTCGAC ATCCTTAA 176,941,577 11.5622
2 GAT-APP-L115-4 GGTCCAGA CGGTTCTT 156,860,763 10.2500
3 GAT-APP-L115-2 CCAGTTAG CCTGTCAT 155,006,626 10.1289
4 GAT-APP-L115-3 TGTTCCGA TTAGCCAG 149,270,606 9.7540
5 GAT-APP-L115-5 TCGGAATG CTACATTG 148,570,399 9.7083
6 GAT-APP-L116-1 TTGAATAG TCCATAAC 140,134,031 9.1570
7 GAT-APP-L116-2 TCTGGCGA AATTCAAC 137,487,164 8.9841
8 GAT-APP-L116-4 GACAGTAA GCGATTAC 137,386,274 8.9775
9 GAT-APP-L116-3 GAAGAAGT CTATTAGC 131,513,829 8.5937
10 GAT-APP-L116-5 CCTTCGCA CATCACTT 130,134,040 8.5036
11 PhiX_CB1 ATGTCGCT CTAGCTCG 5,236,025 0.3421
12 PhiX_CB4 TGTGTCGA TGTCTGAC 4,892,438 0.3197
13 PhiX_CB3 GCACATAG GACTACTA 4,671,165 0.3052
14 PhiX_CB2 CACAGATC ACGAGAGT 4,625,169 0.3022
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 TTGAATAG TCCTAACA 778,935 0.0509
2 GGTCAGAA CGGTTCTT 465,225 0.0304
3 TCTGGCGA AAATTCAA 454,711 0.0297
4 TGTTCGAA TTAGCCAG 431,700 0.0282
5 TCGAATGA CTACATTG 378,782 0.0248
6 CAGTTAGA CCTGTCAT 374,093 0.0244
7 GAGAAGTA CTATTAGC 349,794 0.0229
8 TCTGCGAA AATTCAAC 294,018 0.0192
9 CCAGTTAG CCCTGTCA 290,738 0.0190
10 TCGGAATG CCTACATT 286,920 0.0187
11 CCTTCGCA CCATCACT 279,029 0.0182
12 GAAGAGTA CTATTAGC 276,432 0.0181
13 CTTCGCAA CATCACTT 270,110 0.0177
14 TTATATCT CTATTAGC 261,325 0.0171
15 AAGAAGTA CTATTAGC 258,226 0.0169
16 GTCCAGAA CGGTTCTT 237,470 0.0155
17 TCGGAATG CTAACATT 233,934 0.0153
18 GGTCCGAA CGGTTCTT 231,073 0.0151
19 TTGATAGA TCCATAAC 230,935 0.0151
20 CCTTCGCA CAATCACT 226,951 0.0148
21 TTGAATAG TCCCATAA 225,826 0.0148
22 TCGGATGA CTACATTG 225,706 0.0147
23 TGCTCACA ATCCTTAA 222,036 0.0145
24 GGTCCAGA CGGGTTCT 220,693 0.0144
25 GAAAAGTA CTATTAGC 217,771 0.0142
26 CCAGTTAG CTGTCATA 196,632 0.0128
27 CCTTGCAA CATCACTT 170,723 0.0112
28 TCTGGCGA CAATTCAA 159,915 0.0104
29 TTGAATAG TCCAATAA 142,170 0.0093
30 GACAGTAA GGCGATTA 113,375 0.0074
41.7
Mean Q
95.6%
Q30
84.9%
Q40
25
Reads eliminated
75.0
Mean read length
Paired-End
Trim type
16
Min read length