DVT-0246
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
1,040,774,032
Polonies
95.1%
Q30
97.1%
Index Assignment
150.805
Assigned Yield (Gb)
8 + 8
Lane 1 (I1 + I2)
8 + 8
Lane 2 (I1 + I2)
0.16%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th PhiX_CB4 TGTGTCGA TGTCTGAC 2,305,816 0.2215
50th GAT-APP-L116-4 GACAGTAA GCGATTAC 93,572,175 8.9906
95th GAT-APP-L115-1 TGCTCGAC ATCCTTAA 121,283,390 11.6532
All Indices
# Sample I1 I2 Polonies % Polonies
1 GAT-APP-L115-1 TGCTCGAC ATCCTTAA 121,283,390 11.6532
2 GAT-APP-L115-4 GGTCCAGA CGGTTCTT 107,345,526 10.3140
3 GAT-APP-L115-2 CCAGTTAG CCTGTCAT 104,769,252 10.0665
4 GAT-APP-L115-3 TGTTCCGA TTAGCCAG 101,108,014 9.7147
5 GAT-APP-L115-5 TCGGAATG CTACATTG 99,338,780 9.5447
6 GAT-APP-L116-1 TTGAATAG TCCATAAC 95,877,796 9.2122
7 GAT-APP-L116-2 TCTGGCGA AATTCAAC 94,841,172 9.1126
8 GAT-APP-L116-4 GACAGTAA GCGATTAC 93,572,175 8.9906
9 GAT-APP-L116-5 CCTTCGCA CATCACTT 91,277,108 8.7701
10 GAT-APP-L116-3 GAAGAAGT CTATTAGC 90,092,022 8.6563
11 PhiX_CB1 ATGTCGCT CTAGCTCG 3,067,774 0.2948
12 PhiX_CB2 CACAGATC ACGAGAGT 2,744,436 0.2637
13 PhiX_CB3 GCACATAG GACTACTA 2,730,048 0.2623
14 PhiX_CB4 TGTGTCGA TGTCTGAC 2,305,816 0.2215
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 TTGAATAG TCCTAACA 537,767 0.0517
2 GGTCAGAA CGGTTCTT 322,065 0.0309
3 TCTGGCGA AAATTCAA 317,386 0.0305
4 TGTTCGAA TTAGCCAG 296,160 0.0285
5 CAGTTAGA CCTGTCAT 262,526 0.0252
6 TCGAATGA CTACATTG 256,187 0.0246
7 GAGAAGTA CTATTAGC 250,934 0.0241
8 TCTGCGAA AATTCAAC 205,007 0.0197
9 CCAGTTAG CCCTGTCA 197,685 0.0190
10 CTTCGCAA CATCACTT 194,117 0.0187
11 CCTTCGCA CCATCACT 193,582 0.0186
12 TCGGAATG CCTACATT 191,895 0.0184
13 GAAGAGTA CTATTAGC 191,323 0.0184
14 TTATATCT CTATTAGC 182,696 0.0176
15 AAGAAGTA CTATTAGC 179,654 0.0173
16 GTCCAGAA CGGTTCTT 162,767 0.0156
17 CCTTCGCA CAATCACT 158,849 0.0153
18 GGTCCGAA CGGTTCTT 158,656 0.0152
19 TTGATAGA TCCATAAC 157,439 0.0151
20 TCGGAATG CTAACATT 156,767 0.0151
21 TGCTCACA ATCCTTAA 154,131 0.0148
22 GAAAAGTA CTATTAGC 151,278 0.0145
23 TTGAATAG TCCCATAA 150,810 0.0145
24 TCGGATGA CTACATTG 149,991 0.0144
25 GGTCCAGA CGGGTTCT 149,647 0.0144
26 CCAGTTAG CTGTCATA 139,812 0.0134
27 TCTGGCGA CAATTCAA 136,649 0.0131
28 CCTTGCAA CATCACTT 126,009 0.0121
29 TTGAATAG TCCAATAA 72,106 0.0069
30 GACAGTAA GGCGATTA 31,038 0.0030
31 TTGAATAG CTCCATAA 28,926 0.0028
42.5
Mean Q
96.2%
Q30
86.7%
Q40
36
Reads eliminated
74.9
Mean read length
Paired-End
Trim type
16
Min read length