APP-5322
Run Name
150 + 150
Lane 1 (R1 + R2)
150 + 150
Lane 2 (R1 + R2)
1,267,852,405
Polonies
92.9%
Q30
96.1%
Index Assignment
362.395
Assigned Yield (Gb)
10 + 10
Lane 1 (I1 + I2)
10 + 10
Lane 2 (I1 + I2)
0.38%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th PhiX_Third-2 CACAGATCGT ACGAGAGTCT 4,785,375 0.3774
50th 20250822-SB-L087-UDI140 CAGGTCGTAA GAAGGCATAA 35,873,720 2.8295
95th 20250825-SB-L087-UDI154 GCTTCAATCA CCAGGTGGAA 47,659,090 3.7590
All Indices
# Sample I1 I2 Polonies % Polonies
1 20250825-SB-L087-UDI156 AATGGTACCT CGACGGTTGT 48,025,360 3.7879
2 20250825-SB-L087-UDI154 GCTTCAATCA CCAGGTGGAA 47,659,090 3.7590
3 20250825-SB-L087-UDI153 TTGACCTAGC TTGGTGTTCC 45,516,255 3.5900
4 20250825-SB-L087-UDI148 ATTACGGTTG CGGAATCACC 43,037,160 3.3945
5 20250825-SB-L087-UDI160 GCGTGTCATG AGAACAATCG 42,590,634 3.3593
6 20250825-SB-L087-UDI151 GAACACAGTT CCGAATTCAC 42,570,387 3.3577
7 20250825-SB-L087-UDI157 TGTATCGCGA CACTCACACG 41,911,504 3.3057
8 20250825-SB-L087-UDI159 CAACAATTCG AATCGGTCGC 41,825,776 3.2989
9 20250825-SB-L087-UDI155 TGCGTGCGAA TCATACCGAT 41,655,767 3.2855
10 20250825-SB-L087-UDI146 GTCGTGACAC TTGTATGGCT 41,634,214 3.2838
11 20250825-SB-L087-UDI145 ACCAATCTCG TTCCGGCACT 40,266,191 3.1759
12 20250825-SB-L087-UDI158 GTAACATTGG TTGGCCACGA 39,333,603 3.1024
13 20250825-SB-L087-UDI149 CGGTAAGTAA GAGCTATCTA 38,954,437 3.0725
14 20250822-SB-L087-UDI130 CACACGCCAA GCTGAAGATA 38,814,723 3.0615
15 20250822-SB-L087-UDI132 CGATTGTTCT TGTACAACCA 38,705,282 3.0528
16 20250825-SB-L087-UDI147 TCTCTAGTCG TGGATCGATT 38,053,225 3.0014
17 20250825-SB-L087-UDI150 TAACGTCCGG ACCTCGAGAG 36,944,994 2.9140
18 20250822-SB-L087-UDI144 TGGAGAGCCA TTAGGCACAA 36,323,726 2.8650
19 20250822-SB-L087-UDI140 CAGGTCGTAA GAAGGCATAA 35,873,720 2.8295
20 20250822-SB-L087-UDI137 GCGTGACGTT CTCTCTTCTA 35,285,818 2.7831
21 20250822-SB-L087-UDI131 ACACTGTGAA TCTGTTAGAC 35,047,142 2.7643
22 20250822-SB-L087-UDI135 CGAGTCCGTT CCGCAGTAGT 33,916,132 2.6751
23 20250822-SB-L087-UDI129 GTTGGCGTCT CGAAGTCTAG 33,482,614 2.6409
24 20250822-SB-L087-UDI138 AGGCGTCTGA GGATCTTGTG 32,794,905 2.5867
25 20250822-SB-L087-UDI139 ACTTACGAGG AGCGATTAAC 32,788,951 2.5862
26 20250822-SB-L087-UDI143 GATCTTGGCA TTAGACAGCG 32,722,990 2.5810
27 20250822-SB-L087-UDI134 TTGTAAGAGG GAAGCAGCTG 32,561,520 2.5682
28 20250825-SB-L087-UDI152 AGGTCCTATA AACGTCACGC 32,380,750 2.5540
29 20250822-SB-L087-UDI136 GTGTACTCAA AAGGTTGCTT 31,432,628 2.4792
30 20250822-SB-L087-UDI142 TCTGTCGTGC AAGCACTAGT 30,984,125 2.4438
31 20250822-SB-L087-UDI141 TACGCTAGTT AGCAGACTAA 28,770,388 2.2692
32 20250822-SB-L087-UDI133 TCGGCTACTG CTATTGTGTG 28,319,397 2.2337
33 PhiX_Third-1 ATGTCGCTAG CTAGCTCGTA 5,046,308 0.3980
34 PhiX_Third-3 GCACATAGTC GACTACTAGC 4,827,293 0.3807
35 PhiX_Third-2 CACAGATCGT ACGAGAGTCT 4,785,375 0.3774
36 PhiX_Third-4 TGTGTCGACA TGTCTGACAG 3,895,865 0.3073
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 GCGATCCTTG CCAGGTGGAA 1,357,256 0.1071
2 GCGATCCTTG TCATACCGAT 243,922 0.0192
3 GCGATCCTTG TTCCGGCACT 163,422 0.0129
4 TGGAGAGCCA TTAGACAGCG 143,286 0.0113
5 GCGATCCTTG TTGTATGGCT 107,670 0.0085
6 GAACACAGTT CGAATTCACA 96,420 0.0076
7 TTGACCTAGC TTCCGGCACT 84,858 0.0067
8 GCTTCAATCA CAGGTGGAAA 83,203 0.0066
9 GCGTGACGTT CCAATTAGCA 83,090 0.0066
10 TTGACCTAGC GCGTATGAGC 79,546 0.0063
11 ATGGTACCTA CGACGGTTGT 76,703 0.0060
12 ATTACGGTGA CGGAATCACC 73,217 0.0058
13 TTGACCTAGC TGGTGTTCCA 72,880 0.0057
14 AATGGTACTA CGACGGTTGT 69,706 0.0055
15 TGGAGAGCCA CCGAATTCAC 68,008 0.0054
16 ATTACGGTTG GGAATCACCA 64,003 0.0050
17 AATGTACCTA CGACGGTTGT 63,003 0.0050
18 ACCAATCTCG TCCGGCACTA 61,540 0.0049
19 ACCATCTCGA TTCCGGCACT 60,656 0.0048
20 GTAACATTGG TGGCCACGAA 57,570 0.0045
21 CGAGTCCGTT CGCAGTAGTA 57,563 0.0045
22 ATACGGTTGA CGGAATCACC 56,684 0.0045
23 CGATTGTCTA TGTACAACCA 56,254 0.0044
24 GCTTCATCAA CCAGGTGGAA 54,889 0.0043
25 TGTATCGCGA ACTCACACGA 45,377 0.0036
26 GTCGTGACAC TGTATGGCTA 43,216 0.0034
27 CGGTAGTAAA GAGCTATCTA 33,797 0.0027
28 TGGAGAGCCA TAGGCACAAA 29,364 0.0023
29 ATTACGTTGA CGGAATCACC 15,773 0.0012
30 CAACATTCGA AATCGGTCGC 14,748 0.0012
31 CGATGTTCTA TGTACAACCA 14,005 0.0011
32 GTAACATGGA TTGGCCACGA 11,996 0.0009
41.5
Mean Q
94.5%
Q30
85.0%
Q40
13
Reads eliminated
148.8
Mean read length
Paired-End
Trim type
16
Min read length