APP-4374
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
856,717,462
Polonies
95.2%
Q30
96.6%
Index Assignment
123.946
Assigned Yield (Gb)
9 + 9
Lane 1 (I1 + I2)
9 + 9
Lane 2 (I1 + I2)
0.16%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th 20240923-SB-L040-6 TCCACTAGC ACGGCCAAC 25,306,190 2.9539
50th 20240923-SB-L040-15 CAGAGCTCC CCACGAACG 35,205,747 4.1094
95th 20240923-SB-L040-11 CTTAATCGA TTCTATTGG 41,841,710 4.8840
All Indices
# Sample I1 I2 Polonies % Polonies
1 20240923-SB-L040-8 CTATTAGAC CAATTGTGA 42,635,042 4.9766
2 20240923-SB-L040-11 CTTAATCGA TTCTATTGG 41,841,710 4.8840
3 20240923-SB-L040-22 TTGGCCAAC TTGTTGTTC 41,745,146 4.8727
4 20240923-SB-L040-21 GATAGATGT AAGGTGATT 40,303,462 4.7044
5 20240923-SB-L040-24 CTCCGCTAT TCATGCTTG 39,023,766 4.5550
6 20240923-SB-L040-23 CACGCACAT CCAGGAGTC 39,006,407 4.5530
7 20240923-SB-L040-5 GCTATTACT CGTTGAATT 38,069,217 4.4436
8 20240923-SB-L040-20 TCTTCGCAA TACATCAGA 37,720,641 4.4029
9 20240923-SB-L040-13 ACAACCGAT TCAACTTAG 37,593,929 4.3881
10 20240923-SB-L040-18 GTGCGGTTC TCTTGTGAT 36,789,228 4.2942
11 20240923-SB-L040-10 AATTCGTCT ATTGTAACC 35,382,586 4.1300
12 20240923-SB-L040-17 ATTCTAGAG AATCATGCG 35,315,828 4.1222
13 20240923-SB-L040-15 CAGAGCTCC CCACGAACG 35,205,747 4.1094
14 20240923-SB-L040-9 CTCGTTAGT TATGTGGCC 35,109,735 4.0982
15 20240923-SB-L040-1 TGTAGGCCA TCTAGCCTC 33,627,307 3.9251
16 20240923-SB-L040-2 ATTGCCATA ATATTGGTG 32,265,346 3.7662
17 20240923-SB-L040-3 TACATATCG TCCAATACC 32,157,990 3.7536
18 20240923-SB-L040-19 TACCGTTGA ATTGCGTAT 31,539,020 3.6814
19 20240923-SB-L040-16 CCATCTTGC CCGACCACT 31,015,012 3.6202
20 20240923-SB-L040-14 GGTCACTTG AGGCGACCT 28,380,636 3.3127
21 20240923-SB-L040-4 TATCAACGC GATTCACGG 27,402,321 3.1985
22 20240923-SB-L040-7 TGTCTGTAA AAGAGCGCC 26,336,833 3.0742
23 20240923-SB-L040-6 TCCACTAGC ACGGCCAAC 25,306,190 2.9539
24 20240923-SB-L040-12 TTCCTTGGC TAGGCCGTC 24,087,104 2.8116
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 TGGCCAACA TTGTTGTTC 424,982 0.0496
2 CAACCGATA TCAACTTAG 377,940 0.0441
3 CTTCGCAAA TACATCAGA 372,728 0.0435
4 TTAATCGAA TTCTATTGG 362,382 0.0423
5 ATAGATGTA AAGGTGATT 350,083 0.0409
6 CTATTACTA CGTTGAATT 349,599 0.0408
7 TATTAGACA CAATTGTGA 330,841 0.0386
8 TTCTAGAGA AATCATGCG 314,471 0.0367
9 ATTCGTCTA ATTGTAACC 307,794 0.0359
10 CATCTTGCA CCGACCACT 307,406 0.0359
11 TCGTTAGTA TATGTGGCC 294,439 0.0344
12 GTAGGCCAA TCTAGCCTC 291,933 0.0341
13 TCCGCTATA TCATGCTTG 290,202 0.0339
14 GTCACTTGA AGGCGACCT 286,395 0.0334
15 CCACTAGCA ACGGCCAAC 283,687 0.0331
16 TTGCCATAA ATATTGGTG 282,561 0.0330
17 TGCGGTTCA TCTTGTGAT 282,246 0.0329
18 ACGCACATA CCAGGAGTC 276,432 0.0323
19 ACCGTTGAA ATTGCGTAT 267,806 0.0313
20 ACATATCGA TCCAATACC 254,121 0.0297
21 GTCTGTAAA AAGAGCGCC 246,005 0.0287
22 TCCTTGGCA TAGGCCGTC 224,070 0.0262
23 ATCAACGCA GATTCACGG 212,297 0.0248
24 AGAGCTCCA CCACGAACG 205,750 0.0240
25 CTATTTAGA CAATTGTGA 155,595 0.0182
26 TTTGGCCAA TTGTTGTTC 107,745 0.0126
27 ACAACCCGA TCAACTTAG 91,506 0.0107
28 CTGTCTGTA AAGAGCGCC 73,659 0.0086
29 CTTTAATCG TTCTATTGG 71,501 0.0083
30 CCTATTAGA CAATTGTGA 14,042 0.0016
31 ACAACCGAT TCAAACTTA 12,327 0.0014
44.3
Mean Q
96.5%
Q30
88.6%
Q40
12
Reads eliminated
74.9
Mean read length
Paired-End
Trim type
16
Min read length