APP-4366
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
824,475,499
Polonies
94.6%
Q30
96.6%
Index Assignment
119.166
Assigned Yield (Gb)
9 + 9
Lane 1 (I1 + I2)
9 + 9
Lane 2 (I1 + I2)
0.16%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th 20240920-SB-L040-7 TGTCTGTAA AAGAGCGCC 26,604,290 3.2268
50th 20240920-SB-L040-24 CTCCGCTAT TCATGCTTG 33,478,042 4.0605
95th 20240920-SB-L040-11 CTTAATCGA TTCTATTGG 42,045,583 5.0997
All Indices
# Sample I1 I2 Polonies % Polonies
1 20240920-SB-L040-8 CTATTAGAC CAATTGTGA 43,092,984 5.2267
2 20240920-SB-L040-11 CTTAATCGA TTCTATTGG 42,045,583 5.0997
3 20240920-SB-L040-13 ACAACCGAT TCAACTTAG 39,537,980 4.7955
4 20240920-SB-L040-15 CAGAGCTCC CCACGAACG 38,535,160 4.6739
5 20240920-SB-L040-23 CACGCACAT CCAGGAGTC 37,536,397 4.5528
6 20240920-SB-L040-9 CTCGTTAGT TATGTGGCC 36,153,998 4.3851
7 20240920-SB-L040-10 AATTCGTCT ATTGTAACC 36,071,557 4.3751
8 20240920-SB-L040-2 ATTGCCATA ATATTGGTG 34,501,348 4.1846
9 20240920-SB-L040-22 TTGGCCAAC TTGTTGTTC 34,268,974 4.1565
10 20240920-SB-L040-17 ATTCTAGAG AATCATGCG 34,108,030 4.1369
11 20240920-SB-L040-5 GCTATTACT CGTTGAATT 33,813,723 4.1012
12 20240920-SB-L040-16 CCATCTTGC CCGACCACT 33,540,784 4.0681
13 20240920-SB-L040-24 CTCCGCTAT TCATGCTTG 33,478,042 4.0605
14 20240920-SB-L040-20 TCTTCGCAA TACATCAGA 32,573,374 3.9508
15 20240920-SB-L040-21 GATAGATGT AAGGTGATT 32,491,892 3.9409
16 20240920-SB-L040-1 TGTAGGCCA TCTAGCCTC 29,819,878 3.6168
17 20240920-SB-L040-4 TATCAACGC GATTCACGG 29,676,148 3.5994
18 20240920-SB-L040-3 TACATATCG TCCAATACC 29,566,508 3.5861
19 20240920-SB-L040-14 GGTCACTTG AGGCGACCT 29,140,706 3.5345
20 20240920-SB-L040-18 GTGCGGTTC TCTTGTGAT 28,265,287 3.4283
21 20240920-SB-L040-6 TCCACTAGC ACGGCCAAC 27,707,270 3.3606
22 20240920-SB-L040-19 TACCGTTGA ATTGCGTAT 27,178,839 3.2965
23 20240920-SB-L040-7 TGTCTGTAA AAGAGCGCC 26,604,290 3.2268
24 20240920-SB-L040-12 TTCCTTGGC TAGGCCGTC 26,526,737 3.2174
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 CAACCGATA TCAACTTAG 382,918 0.0464
2 CTTCGCAAA TACATCAGA 349,862 0.0424
3 TGGCCAACA TTGTTGTTC 337,991 0.0410
4 CCACTAGCA ACGGCCAAC 336,212 0.0408
5 CTATTACTA CGTTGAATT 332,262 0.0403
6 CATCTTGCA CCGACCACT 327,090 0.0397
7 TTAATCGAA TTCTATTGG 325,179 0.0394
8 ATAGATGTA AAGGTGATT 317,312 0.0385
9 ATTCGTCTA ATTGTAACC 314,213 0.0381
10 TATTAGACA CAATTGTGA 294,218 0.0357
11 GTCACTTGA AGGCGACCT 282,481 0.0343
12 ACGCACATA CCAGGAGTC 278,875 0.0338
13 ACCGTTGAA ATTGCGTAT 273,604 0.0332
14 ACATATCGA TCCAATACC 271,358 0.0329
15 TCGTTAGTA TATGTGGCC 267,043 0.0324
16 TTCTAGAGA AATCATGCG 265,532 0.0322
17 TTGCCATAA ATATTGGTG 259,041 0.0314
18 ATCAACGCA GATTCACGG 256,349 0.0311
19 GTAGGCCAA TCTAGCCTC 250,126 0.0303
20 GTCTGTAAA AAGAGCGCC 244,892 0.0297
21 TCCTTGGCA TAGGCCGTC 237,715 0.0288
22 AGAGCTCCA CCACGAACG 231,172 0.0280
23 TCCGCTATA TCATGCTTG 217,338 0.0264
24 TGCGGTTCA TCTTGTGAT 200,576 0.0243
25 CTATTTAGA CAATTGTGA 156,929 0.0190
26 ACAACCCGA TCAACTTAG 96,879 0.0118
27 CTGTCTGTA AAGAGCGCC 94,277 0.0114
28 TTTGGCCAA TTGTTGTTC 78,679 0.0095
29 CTTTAATCG TTCTATTGG 63,548 0.0077
30 ATTGCCCAT ATATTGGTG 30,143 0.0037
43.9
Mean Q
95.7%
Q30
86.9%
Q40
5
Reads eliminated
74.9
Mean read length
Paired-End
Trim type
16
Min read length