APP-4548
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
1,033,399,518
Polonies
94.2%
Q30
96.3%
Index Assignment
149.110
Assigned Yield (Gb)
9 + 9
Lane 1 (I1 + I2)
9 + 9
Lane 2 (I1 + I2)
0.18%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th 20241104-SB-L044-6 TCCACTAGC ACGGCCAAC 35,959,258 3.4797
50th 20241104-SB-L044-17 ATTCTAGAG AATCATGCG 40,188,235 3.8889
95th 20241104-SB-L044-8 CTATTAGAC CAATTGTGA 51,123,780 4.9471
All Indices
# Sample I1 I2 Polonies % Polonies
1 20241104-SB-L044-11 CTTAATCGA TTCTATTGG 51,840,358 5.0165
2 20241104-SB-L044-8 CTATTAGAC CAATTGTGA 51,123,780 4.9471
3 20241104-SB-L044-5 GCTATTACT CGTTGAATT 46,502,458 4.4999
4 20241104-SB-L044-3 TACATATCG TCCAATACC 46,451,922 4.4951
5 20241104-SB-L044-9 CTCGTTAGT TATGTGGCC 45,550,049 4.4078
6 20241104-SB-L044-20 TCTTCGCAA TACATCAGA 44,288,697 4.2857
7 20241104-SB-L044-1 TGTAGGCCA TCTAGCCTC 44,058,172 4.2634
8 20241104-SB-L044-7 TGTCTGTAA AAGAGCGCC 43,301,655 4.1902
9 20241104-SB-L044-4 TATCAACGC GATTCACGG 42,783,302 4.1401
10 20241104-SB-L044-22 TTGGCCAAC TTGTTGTTC 41,918,013 4.0563
11 20241104-SB-L044-10 AATTCGTCT ATTGTAACC 41,084,870 3.9757
12 20241104-SB-L044-24 CTCCGCTAT TCATGCTTG 40,523,815 3.9214
13 20241104-SB-L044-17 ATTCTAGAG AATCATGCG 40,188,235 3.8889
14 20241104-SB-L044-13 ACAACCGAT TCAACTTAG 40,185,954 3.8887
15 20241104-SB-L044-15 CAGAGCTCC CCACGAACG 39,748,719 3.8464
16 20241104-SB-L044-21 GATAGATGT AAGGTGATT 39,633,013 3.8352
17 20241104-SB-L044-23 CACGCACAT CCAGGAGTC 39,211,057 3.7944
18 20241104-SB-L044-2 ATTGCCATA ATATTGGTG 38,634,004 3.7385
19 20241104-SB-L044-16 CCATCTTGC CCGACCACT 37,519,209 3.6307
20 20241104-SB-L044-19 TACCGTTGA ATTGCGTAT 36,473,381 3.5295
21 20241104-SB-L044-14 GGTCACTTG AGGCGACCT 36,461,090 3.5283
22 20241104-SB-L044-18 GTGCGGTTC TCTTGTGAT 36,030,824 3.4866
23 20241104-SB-L044-6 TCCACTAGC ACGGCCAAC 35,959,258 3.4797
24 20241104-SB-L044-12 TTCCTTGGC TAGGCCGTC 35,815,680 3.4658
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 TGGCCAACA TTGTTGTTC 491,619 0.0476
2 TTAATCGAA TTCTATTGG 488,899 0.0473
3 CTTCGCAAA TACATCAGA 428,032 0.0414
4 TATTAGACA CAATTGTGA 424,987 0.0411
5 CAACCGATA TCAACTTAG 418,868 0.0405
6 TCGTTAGTA TATGTGGCC 418,725 0.0405
7 CTATTACTA CGTTGAATT 412,764 0.0399
8 CATCTTGCA CCGACCACT 405,599 0.0392
9 TGCGGTTCA TCTTGTGAT 404,255 0.0391
10 CCACTAGCA ACGGCCAAC 402,531 0.0390
11 GTCACTTGA AGGCGACCT 397,457 0.0385
12 GTAGGCCAA TCTAGCCTC 392,992 0.0380
13 GTCTGTAAA AAGAGCGCC 391,981 0.0379
14 TTCTAGAGA AATCATGCG 385,085 0.0373
15 TTGCCATAA ATATTGGTG 372,162 0.0360
16 ATTCGTCTA ATTGTAACC 362,606 0.0351
17 TCCTTGGCA TAGGCCGTC 362,099 0.0350
18 ACATATCGA TCCAATACC 342,699 0.0332
19 TCCGCTATA TCATGCTTG 339,721 0.0329
20 ATAGATGTA AAGGTGATT 326,643 0.0316
21 ATCAACGCA GATTCACGG 315,519 0.0305
22 ACGCACATA CCAGGAGTC 300,543 0.0291
23 ACCGTTGAA ATTGCGTAT 287,888 0.0279
24 AGAGCTCCA CCACGAACG 270,884 0.0262
25 CTATTTAGA CAATTGTGA 194,914 0.0189
26 TTTGGCCAA TTGTTGTTC 120,714 0.0117
27 CTGTCTGTA AAGAGCGCC 119,895 0.0116
28 ACAACCCGA TCAACTTAG 102,344 0.0099
29 CTTTAATCG TTCTATTGG 97,310 0.0094
30 ATTGCCCAT ATATTGGTG 31,906 0.0031
44.0
Mean Q
96.0%
Q30
87.6%
Q40
11
Reads eliminated
74.9
Mean read length
Paired-End
Trim type
16
Min read length