APP-4306
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
987,521,224
Polonies
95.3%
Q30
99.0%
Index Assignment
146.460
Assigned Yield (Gb)
9 + 9
Lane 1 (I1 + I2)
9 + 9
Lane 2 (I1 + I2)
0.02%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th 20240906-JM-L1112-5 GCTATTACT CGTTGAATT 34,941,501 3.5383
50th 20240906-JM-L1112-23 CACGCACAT CCAGGAGTC 40,703,266 4.1218
95th 20240906-JM-L1112-24 CTCCGCTAT TCATGCTTG 45,407,254 4.5981
All Indices
# Sample I1 I2 Polonies % Polonies
1 20240906-JM-L1112-22 TTGGCCAAC TTGTTGTTC 45,941,295 4.6522
2 20240906-JM-L1112-24 CTCCGCTAT TCATGCTTG 45,407,254 4.5981
3 20240906-JM-L1112-1 TGTAGGCCA TCTAGCCTC 44,862,001 4.5429
4 20240906-JM-L1112-8 CTATTAGAC CAATTGTGA 44,291,576 4.4851
5 20240906-JM-L1112-18 GTGCGGTTC TCTTGTGAT 43,895,871 4.4451
6 20240906-JM-L1112-17 ATTCTAGAG AATCATGCG 43,650,231 4.4202
7 20240906-JM-L1112-11 CTTAATCGA TTCTATTGG 43,045,587 4.3590
8 20240906-JM-L1112-10 AATTCGTCT ATTGTAACC 43,043,047 4.3587
9 20240906-JM-L1112-7 TGTCTGTAA AAGAGCGCC 42,845,455 4.3387
10 20240906-JM-L1112-20 TCTTCGCAA TACATCAGA 42,827,689 4.3369
11 20240906-JM-L1112-19 TACCGTTGA ATTGCGTAT 41,065,206 4.1584
12 20240906-JM-L1112-13 ACAACCGAT TCAACTTAG 40,822,206 4.1338
13 20240906-JM-L1112-23 CACGCACAT CCAGGAGTC 40,703,266 4.1218
14 20240906-JM-L1112-15 CAGAGCTCC CCACGAACG 39,972,752 4.0478
15 20240906-JM-L1112-3 TACATATCG TCCAATACC 39,661,031 4.0162
16 20240906-JM-L1112-12 TTCCTTGGC TAGGCCGTC 39,039,300 3.9533
17 20240906-JM-L1112-6 TCCACTAGC ACGGCCAAC 38,779,381 3.9269
18 20240906-JM-L1112-9 CTCGTTAGT TATGTGGCC 38,631,512 3.9120
19 20240906-JM-L1112-2 ATTGCCATA ATATTGGTG 38,437,327 3.8923
20 20240906-JM-L1112-4 TATCAACGC GATTCACGG 37,845,314 3.8324
21 20240906-JM-L1112-16 CCATCTTGC CCGACCACT 37,298,593 3.7770
22 20240906-JM-L1112-14 GGTCACTTG AGGCGACCT 36,155,855 3.6613
23 20240906-JM-L1112-5 GCTATTACT CGTTGAATT 34,941,501 3.5383
24 20240906-JM-L1112-21 GATAGATGT AAGGTGATT 34,554,722 3.4991
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 ATTCTAGAG AATTATTCG 51,768 0.0052
2 TGGCCAACA TTGTTGTTC 44,971 0.0046
3 CTATTAGAC TAATTGTTA 43,711 0.0044
4 TCCGCTATA TCATGCTTG 35,937 0.0036
5 TCCTTGGCA TAGGCCGTC 34,844 0.0035
6 CATCTTGCA CCGACCACT 34,152 0.0035
7 ATTCGTCTA ATTGTAACC 34,056 0.0034
8 TGCGGTTCA TCTTGTGAT 33,964 0.0034
9 CTTCGCAAA TACATCAGA 33,007 0.0033
10 GTCACTTGA AGGCGACCT 31,599 0.0032
11 TATTAGACA CAATTGTGA 30,936 0.0031
12 TTAATCGAA TTCTATTGG 30,820 0.0031
13 TTGCCATAA ATATTGGTG 28,706 0.0029
14 TTCTAGAGA AATCATGCG 28,082 0.0028
15 AGAGCTCCA CCACGAACG 27,883 0.0028
16 CCACTAGCA ACGGCCAAC 27,480 0.0028
17 TCGTTAGTA TATGTGGCC 26,889 0.0027
18 CAACCGATA TCAACTTAG 26,592 0.0027
19 ACCGTTGAA ATTGCGTAT 25,750 0.0026
20 ACGCACATA CCAGGAGTC 25,139 0.0025
21 ATCAACGCA GATTCACGG 23,952 0.0024
22 GTCTGTAAA AAGAGCGCC 23,407 0.0024
23 ACATATCGA TCCAATACC 23,158 0.0023
24 GTAGGCCAA TCTAGCCTC 22,262 0.0023
25 CTATTACTA CGTTGAATT 21,352 0.0022
26 ATAGATGTA AAGGTGATT 21,240 0.0022
27 CACGCACAT TCAGGAGTG 18,044 0.0018
28 GGTCACTTG AGGTGATCT 12,005 0.0012
29 GCTATTACT TATTGAATT 10,713 0.0011
30 TTTCCTTGG TAGGCCGTC 5,771 0.0006
31 CACGCACAT CCAGGAATT 5,289 0.0005
44.1
Mean Q
96.1%
Q30
88.3%
Q40
103
Reads eliminated
74.9
Mean read length
Paired-End
Trim type
16
Min read length