APP-4401
Run Name
150 + 150
Lane 1 (R1 + R2)
150 + 150
Lane 2 (R1 + R2)
1,073,056,317
Polonies
91.6%
Q30
99.0%
Index Assignment
304.037
Assigned Yield (Gb)
9 + 9
Lane 1 (I1 + I2)
9 + 9
Lane 2 (I1 + I2)
0.02%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th 20241002-MM-L062i-67 TTCCGAACG GCTGAATGT 34,049,146 3.1731
50th 20241002-MM-L062i-53 GGTTGGATG GTTCTGTAA 43,756,077 4.0777
95th 20241002-MM-L062i-66 ACACAATCC GTACCAGAG 51,916,791 4.8382
All Indices
# Sample I1 I2 Polonies % Polonies
1 20241002-MM-L062i-52 ATCCTCATC AGATCTCTA 52,255,602 4.8698
2 20241002-MM-L062i-66 ACACAATCC GTACCAGAG 51,916,791 4.8382
3 20241002-MM-L062i-65 TGAGATGGA TGGAGTATA 51,836,511 4.8307
4 20241002-MM-L062i-69 CCAAGACCG TGAACGGAT 50,634,604 4.7187
5 20241002-MM-L062i-70 CCTCATGTC AGAGGAAGG 50,294,663 4.6870
6 20241002-MM-L062i-61 ATGCGTCCT TTACACTCA 49,080,728 4.5739
7 20241002-MM-L062i-68 ATCACACTA TGTAAGCGG 48,622,941 4.5313
8 20241002-MM-L062i-60 AACAACAAG TTATGGAGA 46,382,063 4.3224
9 20241002-MM-L062i-50 GTACTTCAA CAAGTGCAG 44,971,447 4.1910
10 20241002-MM-L062i-58 CCGCTGCTA AACTAACAC 44,251,421 4.1239
11 20241002-MM-L062i-72 CAGGAGTGC CCAACACGA 44,199,675 4.1190
12 20241002-MM-L062i-64 ATATTCGGT GACACTTAT 43,914,751 4.0925
13 20241002-MM-L062i-53 GGTTGGATG GTTCTGTAA 43,756,077 4.0777
14 20241002-MM-L062i-71 CCAGAGATG TTGGCTGGA 43,440,738 4.0483
15 20241002-MM-L062i-54 GCCTCATAG CACCAGTGT 43,018,693 4.0090
16 20241002-MM-L062i-51 TCACTCAAG GACTGATTA 42,230,270 3.9355
17 20241002-MM-L062i-63 ACCTATTCT CACCAACCG 42,199,710 3.9327
18 20241002-MM-L062i-49 GTCCACGGA GGTCCGAGA 42,190,872 3.9318
19 20241002-MM-L062i-59 GAGCATCTA GTTACCAAC 41,531,587 3.8704
20 20241002-MM-L062i-55 TCCGCACTC CGACCTTGA 40,282,660 3.7540
21 20241002-MM-L062i-57 GGTCTGAGC ATTGACCTG 39,423,128 3.6739
22 20241002-MM-L062i-56 AAGATTGGA ATCCGCGTC 38,292,891 3.5686
23 20241002-MM-L062i-67 TTCCGAACG GCTGAATGT 34,049,146 3.1731
24 20241002-MM-L062i-62 CCACACCAT CACTGACGT 33,260,533 3.0996
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 CGCTGCTAA AACTAACAC 55,349 0.0052
2 CTCATGTCA AGAGGAAGG 54,491 0.0051
3 CAAGACCGA TGAACGGAT 52,057 0.0049
4 CAGAGATGA TTGGCTGGA 43,777 0.0041
5 ACAACAAGA TTATGGAGA 42,701 0.0040
6 GTCTGAGCA ATTGACCTG 42,449 0.0040
7 GAGATGGAA TGGAGTATA 41,968 0.0039
8 GTTGGATGA GTTCTGTAA 41,741 0.0039
9 CACAATCCA GTACCAGAG 38,377 0.0036
10 TGCGTCCTA TTACACTCA 37,782 0.0035
11 AGATTGGAA ATCCGCGTC 37,356 0.0035
12 TCCTCATCA AGATCTCTA 37,297 0.0035
13 CACACCATA CACTGACGT 36,381 0.0034
14 TACTTCAAA CAAGTGCAG 36,121 0.0034
15 AACAAGAGT TTATGGAGA 35,132 0.0033
16 AGGAGTGCA CCAACACGA 34,092 0.0032
17 AGCATCTAA GTTACCAAC 33,317 0.0031
18 CCTCATAGA CACCAGTGT 32,685 0.0030
19 TATTCGGTA GACACTTAT 31,689 0.0030
20 CACTCAAGA GACTGATTA 31,482 0.0029
21 TCCACGGAA GGTCCGAGA 31,087 0.0029
22 TCACACTAA TGTAAGCGG 30,853 0.0029
23 CCGCACTCA CGACCTTGA 30,591 0.0029
24 TCCGAACGA GCTGAATGT 29,132 0.0027
25 CCTATTCTA CACCAACCG 26,664 0.0025
26 AACAACAAG TATGGAGAC 22,228 0.0021
27 AAGATTGGA ATACGCGTA 16,378 0.0015
28 GTCCACGGA GATCCAAGA 11,077 0.0010
29 CCAGAGATG TGGCTGGAC 9,428 0.0009
30 ATGCGTCCT TACACTCAC 9,143 0.0009
42.9
Mean Q
94.3%
Q30
85.2%
Q40
12
Reads eliminated
143.3
Mean read length
Paired-End
Trim type
16
Min read length