APP-4469
Run Name
150 + 150
Lane 1 (R1 + R2)
150 + 150
Lane 2 (R1 + R2)
820,850,471
Polonies
93.5%
Q30
96.7%
Index Assignment
224.526
Assigned Yield (Gb)
9 + 9
Lane 1 (I1 + I2)
9 + 9
Lane 2 (I1 + I2)
0.03%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th 20241018-JM-L1220-HG002-88 GCGGATGAT ATAACTACC 27,221,593 3.3163
50th 20241018-JM-L1220-HG001-76 GTAGGAGCC CCACTCATT 33,409,399 4.0701
95th 20241018-JM-L1220-HG002-89 TAGTGACCA ATTCGTTGA 36,483,034 4.4445
All Indices
# Sample I1 I2 Polonies % Polonies
1 20241018-JM-L1220-HG001-84 CCGCGAACA CCAATGTTG 39,470,906 4.8085
2 20241018-JM-L1220-HG002-89 TAGTGACCA ATTCGTTGA 36,483,034 4.4445
3 20241018-JM-L1220-HG002-91 ACGGCACGA AGCACCTAG 36,457,869 4.4415
4 20241018-JM-L1220-HG002-90 AAGCCGGAC AATACCGGT 36,013,243 4.3873
5 20241018-JM-L1220-HG002-96 AGCGTTCAG TCTCTCTGC 35,703,827 4.3496
6 20241018-JM-L1220-HG001-79 CCTGGAGAA TGAGAACAA 35,691,642 4.3481
7 20241018-JM-L1220-HG002-94 CACCAATGG CGCGAGACT 35,606,789 4.3378
8 20241018-JM-L1220-HG001-80 CGTGCAACG CCGGTATCG 35,365,242 4.3084
9 20241018-JM-L1220-HG001-78 AGGAAGCCG GCTATTATG 35,166,823 4.2842
10 20241018-JM-L1220-HG001-74 AACGAAGTC ACGAAGGCT 34,357,953 4.1857
11 20241018-JM-L1220-HG002-95 CGCACCGAA GAAGATGTT 33,788,980 4.1163
12 20241018-JM-L1220-HG002-87 CGAATCTGG CGCACTGTG 33,425,532 4.0721
13 20241018-JM-L1220-HG001-76 GTAGGAGCC CCACTCATT 33,409,399 4.0701
14 20241018-JM-L1220-HG002-86 AGGTCCGTG CGTGATAGC 32,662,063 3.9791
15 20241018-JM-L1220-HG001-77 CCGATATAT CAGCACAAG 32,510,447 3.9606
16 20241018-JM-L1220-HG001-75 TGCGGATAC ACCACAATT 32,458,321 3.9542
17 20241018-JM-L1220-HG002-93 GCATAGGCA CAGCGTTCC 31,890,483 3.8851
18 20241018-JM-L1220-HG002-85 CAACCGCAG ACAGCCGTT 31,815,454 3.8759
19 20241018-JM-L1220-HG001-83 GCGGCCTTA GTGTCTCAC 30,162,363 3.6745
20 20241018-JM-L1220-HG001-81 CACCGACTC TCCACCTGT 29,701,647 3.6184
21 20241018-JM-L1220-HG001-82 CAAGGCGTT CTTCGACAC 29,553,542 3.6004
22 20241018-JM-L1220-HG002-92 GCTCAATAA CAGTTGACC 29,234,466 3.5615
23 20241018-JM-L1220-HG002-88 GCGGATGAT ATAACTACC 27,221,593 3.3163
24 20241018-JM-L1220-HG001-73 ACGTAGAGT CGAATGACA 25,816,313 3.1451
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 CACATGCTG AGACACTGT 5,071,245 0.6178
2 ACGTGTAGC GCTAGTGCA 4,907,921 0.5979
3 TGTGCATCA TAGTCGATC 4,898,207 0.5967
4 GTACACGAT CTCGTACAG 4,431,653 0.5399
5 GTACACGAT CTCGTCCAG 79,185 0.0096
6 GTACACGAT CTCGTTCAG 73,406 0.0089
7 CGCGAACAA CCAATGTTG 36,944 0.0045
8 GCTCAATAA CAGCGTTCC 36,686 0.0045
9 GCATAGGCA CAGTTGACC 34,751 0.0042
10 CTGGAGAAA TGAGAACAA 33,955 0.0041
11 AGCCGGACA AATACCGGT 32,206 0.0039
12 ACGAAGTCA ACGAAGGCT 30,384 0.0037
13 CGATATATA CAGCACAAG 29,084 0.0035
14 CATAGGCAA CAGCGTTCC 28,355 0.0035
15 ACGTGTAGC GCTAGTGCC 27,674 0.0034
16 GCGTTCAGA TCTCTCTGC 26,487 0.0032
17 ACCAATGGA CGCGAGACT 25,849 0.0031
18 CGGCACGAA AGCACCTAG 25,327 0.0031
19 GGAAGCCGA GCTATTATG 24,193 0.0029
20 TAGGAGCCA CCACTCATT 23,005 0.0028
21 CAAGGCGTT CTTCGCCCC 21,947 0.0027
22 CTCAATAAA CAGTTGACC 21,812 0.0027
23 CCTGGAGAA GAGAACAAC 21,620 0.0026
24 CGGCCTTAA GTGTCTCAC 19,284 0.0023
25 GAATCTGGA CGCACTGTG 19,010 0.0023
26 CGGATGATA ATAACTACC 18,294 0.0022
27 CACATGCTG AGACACNGT 10,567 0.0013
28 ACGTGTAGC GCTAGTNCA 10,463 0.0013
29 TGTGCATCA TAGTCGNTC 10,252 0.0012
30 GTACACGAT CTCGTANAG 9,645 0.0012
31 AGTGACCAA ATTCGTTGA 9,461 0.0012
32 GTGCAACGA CCGGTATCG 7,020 0.0009
33 GGTCCGTGA CGTGATAGC 6,690 0.0008
34 GCGGATACA ACCACAATT 6,103 0.0007
43.7
Mean Q
95.6%
Q30
88.6%
Q40
17
Reads eliminated
140.9
Mean read length
Paired-End
Trim type
16
Min read length