APP-4410
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
942,536,309
Polonies
94.8%
Q30
99.0%
Index Assignment
139.774
Assigned Yield (Gb)
9 + 9
Lane 1 (I1 + I2)
9 + 9
Lane 2 (I1 + I2)
0.02%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th 20241004-MM-L063i-67 TTCCGAACG GCTGAATGT 31,987,413 3.3938
50th 20241004-MM-L063i-63 ACCTATTCT CACCAACCG 37,814,854 4.0120
95th 20241004-MM-L063i-65 TGAGATGGA TGGAGTATA 46,166,538 4.8981
All Indices
# Sample I1 I2 Polonies % Polonies
1 20241004-MM-L063i-52 ATCCTCATC AGATCTCTA 47,041,824 4.9910
2 20241004-MM-L063i-65 TGAGATGGA TGGAGTATA 46,166,538 4.8981
3 20241004-MM-L063i-66 ACACAATCC GTACCAGAG 45,917,142 4.8717
4 20241004-MM-L063i-69 CCAAGACCG TGAACGGAT 44,985,727 4.7728
5 20241004-MM-L063i-70 CCTCATGTC AGAGGAAGG 44,168,515 4.6861
6 20241004-MM-L063i-68 ATCACACTA TGTAAGCGG 43,604,907 4.6263
7 20241004-MM-L063i-61 ATGCGTCCT TTACACTCA 43,056,837 4.5682
8 20241004-MM-L063i-60 AACAACAAG TTATGGAGA 41,177,063 4.3688
9 20241004-MM-L063i-58 CCGCTGCTA AACTAACAC 40,576,931 4.3051
10 20241004-MM-L063i-72 CAGGAGTGC CCAACACGA 39,171,506 4.1560
11 20241004-MM-L063i-71 CCAGAGATG TTGGCTGGA 39,040,478 4.1421
12 20241004-MM-L063i-64 ATATTCGGT GACACTTAT 38,736,255 4.1098
13 20241004-MM-L063i-63 ACCTATTCT CACCAACCG 37,814,854 4.0120
14 20241004-MM-L063i-51 TCACTCAAG GACTGATTA 37,744,246 4.0045
15 20241004-MM-L063i-50 GTACTTCAA CAAGTGCAG 36,684,505 3.8921
16 20241004-MM-L063i-53 GGTTGGATG GTTCTGTAA 36,666,214 3.8902
17 20241004-MM-L063i-55 TCCGCACTC CGACCTTGA 36,170,754 3.8376
18 20241004-MM-L063i-54 GCCTCATAG CACCAGTGT 35,625,848 3.7798
19 20241004-MM-L063i-49 GTCCACGGA GGTCCGAGA 34,884,564 3.7011
20 20241004-MM-L063i-56 AAGATTGGA ATCCGCGTC 34,338,596 3.6432
21 20241004-MM-L063i-59 GAGCATCTA GTTACCAAC 34,244,808 3.6333
22 20241004-MM-L063i-57 GGTCTGAGC ATTGACCTG 33,087,795 3.5105
23 20241004-MM-L063i-67 TTCCGAACG GCTGAATGT 31,987,413 3.3938
24 20241004-MM-L063i-62 CCACACCAT CACTGACGT 30,532,980 3.2394
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 CGCTGCTAA AACTAACAC 52,355 0.0056
2 CTCATGTCA AGAGGAAGG 48,781 0.0052
3 CAAGACCGA TGAACGGAT 47,385 0.0050
4 CAGAGATGA TTGGCTGGA 40,510 0.0043
5 ACAACAAGA TTATGGAGA 38,598 0.0041
6 GAGATGGAA TGGAGTATA 35,683 0.0038
7 GTCTGAGCA ATTGACCTG 35,168 0.0037
8 CACAATCCA GTACCAGAG 34,880 0.0037
9 AGATTGGAA ATCCGCGTC 34,871 0.0037
10 GTTGGATGA GTTCTGTAA 34,591 0.0037
11 TGCGTCCTA TTACACTCA 34,393 0.0036
12 CACACCATA CACTGACGT 34,333 0.0036
13 TCCTCATCA AGATCTCTA 34,009 0.0036
14 TACTTCAAA CAAGTGCAG 32,332 0.0034
15 AACAAGAGT TTATGGAGA 32,139 0.0034
16 AGGAGTGCA CCAACACGA 31,386 0.0033
17 AGCATCTAA GTTACCAAC 30,434 0.0032
18 CCTCATAGA CACCAGTGT 29,916 0.0032
19 TCCGAACGA GCTGAATGT 29,566 0.0031
20 TATTCGGTA GACACTTAT 28,992 0.0031
21 CACTCAAGA GACTGATTA 28,959 0.0031
22 TCACACTAA TGTAAGCGG 28,758 0.0031
23 CCGCACTCA CGACCTTGA 28,099 0.0030
24 TCCACGGAA GGTCCGAGA 27,213 0.0029
25 CCTATTCTA CACCAACCG 24,408 0.0026
26 AACAACAAG TATGGAGAC 19,520 0.0021
27 TGAGATGGA GGAGTATAC 13,853 0.0015
28 CCAAGACCG GAACGGATC 13,600 0.0014
29 CCAGAGATG TGGCTGGAC 8,507 0.0009
30 ATCACACTA GTAAGCGGC 4,724 0.0005
31 CCCGCTGCT AACTAACAC 4,030 0.0004
44.0
Mean Q
96.0%
Q30
88.2%
Q40
13
Reads eliminated
74.9
Mean read length
Paired-End
Trim type
16
Min read length