APP-3340
Run Name
150 + 150
Lane 1 (R1 + R2)
150 + 150
Lane 2 (R1 + R2)
945,519,709
Polonies
94.6%
Q30
96.4%
Index Assignment
272.799
Assigned Yield (Gb)
8 + 8
Lane 1 (I1 + I2)
8 + 8
Lane 2 (I1 + I2)
0.38%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th PhiX_CB4 TGTGTCGA TGTCTGAC 5,141,552 0.5438
50th PhiX_CB2 CACAGATC ACGAGAGT 6,278,132 0.6640
95th JM-L856-HG001 AGTTGCTT TAGCATTG 454,245,176 48.0419
All Indices
# Sample I1 I2 Polonies % Polonies
1 JM-L856-HG001 AGTTGCTT TAGCATTG 454,245,176 48.0419
2 JM-L856-HG002 TGTTCCGA TTAGCCAG 432,802,638 45.7740
3 PhiX_CB1 ATGTCGCT CTAGCTCG 6,708,048 0.7095
4 PhiX_CB2 CACAGATC ACGAGAGT 6,278,132 0.6640
5 PhiX_CB3 GCACATAG GACTACTA 6,260,713 0.6621
6 PhiX_CB4 TGTGTCGA TGTCTGAC 5,141,552 0.5438
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 AGTTGCTT TAGCATGA 1,307,398 0.1383
2 TGTTCGAA TTAGCCAG 1,283,893 0.1358
3 AGTTGCTT TTAGCCAG 1,129,638 0.1195
4 TGTTCCGA TTAGCAGA 516,774 0.0547
5 AGTTGCTT TAGCCTTT 500,979 0.0530
6 AGTTGTTA TAGCATTG 474,959 0.0502
7 AGTTCTTA TAGCATTG 407,269 0.0431
8 AGTTGCTT TAAGCCCT 386,375 0.0409
9 ATTGCTTA TAGCATTG 383,351 0.0405
10 TGTTCCGA TAGCATTG 369,148 0.0390
11 TGTCCGAA TTAGCCAG 346,686 0.0367
12 TGTTCCGA TTAGCCCA 346,381 0.0366
13 AGTTGCTT TGCATTGA 342,340 0.0362
14 AGTGCTTA TAGCATTG 329,934 0.0349
15 TGTTCCGA TTAAGCCA 322,568 0.0341
16 GTTGCTTA TAGCATTG 318,024 0.0336
17 TTTCCGAA TTAGCCAG 315,645 0.0334
18 AGTTGCTT TTAGCCAT 296,933 0.0314
19 TGTTCCGA TTTAGCCA 284,313 0.0301
20 AGTTGCTT TAAGCATT 283,865 0.0300
21 AGTTGCTT TAGGCATT 269,387 0.0285
22 TGTTCCGA TTAGGCCA 256,269 0.0271
23 TGTTCCGA TTAGCCGA 235,567 0.0249
24 TGTTCCGA CTTAGCCA 222,090 0.0235
25 AGTTGCTT GAAGCCCT 213,300 0.0226
26 AGTTGCTT TACATTGA 205,217 0.0217
27 AGTTGCTT TTGCCTTG 157,307 0.0166
28 AGTTGCTT TAGATTGA 137,630 0.0146
29 AGTTGCTT TAAGCTCT 84,822 0.0090
30 AGTTGCTT TTAGCCCT 76,899 0.0081
31 TGTTCCCG TTAGCCAG 70,246 0.0074
32 AGTTCCGT TAGCCTTG 58,702 0.0062
42.9
Mean Q
96.5%
Q30
89.0%
Q40
14
Reads eliminated
149.1
Mean read length
Paired-End
Trim type
16
Min read length