DVT-0127
Run Name
75 + 75
Lane 1 (R1 + R2)
75 + 75
Lane 2 (R1 + R2)
1,027,465,984
Polonies
94.2%
Q30
96.8%
Index Assignment
148.324
Assigned Yield (Gb)
8 + 8
Lane 1 (I1 + I2)
8 + 8
Lane 2 (I1 + I2)
0.20%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th PhiX_CB4 TGTGTCGA TGTCTGAC 1,595,959 0.1553
50th GAT-APP-L116-4 GACAGTAA GCGATTAC 92,005,104 8.9546
95th GAT-APP-L115-1 TGCTCGAC ATCCTTAA 118,536,081 11.5367
All Indices
# Sample I1 I2 Polonies % Polonies
1 GAT-APP-L115-1 TGCTCGAC ATCCTTAA 118,536,081 11.5367
2 GAT-APP-L115-4 GGTCCAGA CGGTTCTT 107,706,042 10.4827
3 GAT-APP-L115-2 CCAGTTAG CCTGTCAT 105,588,675 10.2766
4 GAT-APP-L115-3 TGTTCCGA TTAGCCAG 101,822,685 9.9101
5 GAT-APP-L115-5 TCGGAATG CTACATTG 101,030,296 9.8330
6 GAT-APP-L116-1 TTGAATAG TCCATAAC 94,720,541 9.2188
7 GAT-APP-L116-2 TCTGGCGA AATTCAAC 92,225,812 8.9760
8 GAT-APP-L116-4 GACAGTAA GCGATTAC 92,005,104 8.9546
9 GAT-APP-L116-5 CCTTCGCA CATCACTT 86,886,931 8.4564
10 GAT-APP-L116-3 GAAGAAGT CTATTAGC 86,391,513 8.4082
11 PhiX_CB1 ATGTCGCT CTAGCTCG 2,106,109 0.2050
12 PhiX_CB2 CACAGATC ACGAGAGT 1,861,203 0.1811
13 PhiX_CB3 GCACATAG GACTACTA 1,846,242 0.1797
14 PhiX_CB4 TGTGTCGA TGTCTGAC 1,595,959 0.1553
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 TTGAATAG TCCTAACA 520,881 0.0507
2 GGTCAGAA CGGTTCTT 314,720 0.0306
3 TCTGGCGA AAATTCAA 304,560 0.0296
4 TGTTCGAA TTAGCCAG 297,991 0.0290
5 CAGTTAGA CCTGTCAT 259,964 0.0253
6 TCGAATGA CTACATTG 256,880 0.0250
7 GAGAAGTA CTATTAGC 235,823 0.0230
8 TCTGCGAA AATTCAAC 195,893 0.0191
9 CCAGTTAG CCCTGTCA 193,863 0.0189
10 TCGGAATG CCTACATT 190,889 0.0186
11 GAAGAGTA CTATTAGC 182,979 0.0178
12 CCTTCGCA CCATCACT 180,171 0.0175
13 CTTCGCAA CATCACTT 177,084 0.0172
14 AAGAAGTA CTATTAGC 170,377 0.0166
15 TTATATCT CTATTAGC 167,731 0.0163
16 GTCCAGAA CGGTTCTT 157,079 0.0153
17 TCGGAATG CTAACATT 155,238 0.0151
18 TTGATAGA TCCATAAC 153,928 0.0150
19 TCGGATGA CTACATTG 152,771 0.0149
20 GGTCCGAA CGGTTCTT 152,038 0.0148
21 TTGAATAG TCCCATAA 150,288 0.0146
22 CCTTCGCA CAATCACT 149,656 0.0146
23 TGCTCACA ATCCTTAA 148,593 0.0145
24 GGTCCAGA CGGGTTCT 142,830 0.0139
25 GAAAAGTA CTATTAGC 142,410 0.0139
26 CCAGTTAG CTGTCATA 116,072 0.0113
27 TCTGGCGA CAATTCAA 103,201 0.0100
28 CCTTGCAA CATCACTT 101,025 0.0098
29 TTGAATAG TCCAATAA 96,846 0.0094
30 GGTCCAGA CGGTTCAC 58,182 0.0057
31 GACAGTAA GGCGATTA 33,907 0.0033
42.4
Mean Q
96.2%
Q30
86.4%
Q40
30
Reads eliminated
74.9
Mean read length
Paired-End
Trim type
16
Min read length