APP-3165
Run Name
28 + 90
Lane 1 (R1 + R2)
28 + 90
Lane 2 (R1 + R2)
1,026,924,063
Polonies
98.7%
Q30
98.7%
Index Assignment
119.595
Assigned Yield (Gb)
10 + 10
Lane 1 (I1 + I2)
10 + 10
Lane 2 (I1 + I2)
0.00%
Unexpected Pairs
Index Percentiles
Percentile Sample I1 I2 Polonies % Polonies
5th PhiX_CB4 TGTCGACACA CTGTCAGACA 1,491,042 0.1452
50th PhiX_CB3 GACTATGTGC GCTAGTAGTC 1,837,722 0.1790
95th SI-TS-D2 GAATCAGCCT GTCATCTAGC 1,006,385,282 98.0000
All Indices
# Sample I1 I2 Polonies % Polonies
1 SI-TS-D2 GAATCAGCCT GTCATCTAGC 1,006,385,282 98.0000
2 PhiX_CB1 CTAGCGACAT TACGAGCTAG 2,096,536 0.2042
3 PhiX_CB3 GACTATGTGC GCTAGTAGTC 1,837,722 0.1790
4 PhiX_CB2 ACGATCTGTG AGACTCTCGT 1,775,334 0.1729
5 PhiX_CB4 TGTCGACACA CTGTCAGACA 1,491,042 0.1452
Top Unassigned Sequences
# I1 I2 Polonies % Polonies
1 AGGCTGATCA GCTAGATGAC 1,315,866 0.1281
2 AGCTGATTCA GCTAGATGAC 1,084,654 0.1056
3 AGGCTATTCA GCTAGATGAC 815,108 0.0794
4 AGGCGATTCA GCTAGATGAC 663,008 0.0646
5 AGGCTGATTC GCTAGATGCA 600,486 0.0585
6 GGCTGATTCA GCTAGATGAC 578,372 0.0563
7 AGGCTGATTC GCTGATGACA 440,806 0.0429
8 AGGCTGATTC GTAGATGACA 357,152 0.0348
9 AGGCTGATTC GCAGATGACA 323,777 0.0315
10 AGGCTGTTCA GCTAGATGAC 310,135 0.0302
11 AGGCTGATTC GCTAATGACA 307,819 0.0300
12 AGGCTGATTC GCTAGATACA 305,594 0.0298
13 AGGCTGATTC GCTAGTGACA 274,783 0.0268
14 AGGTGATTCA GCTAGATGAC 268,428 0.0261
15 AGGCTGATTC GCTAGAGACA 234,118 0.0228
16 CAGGCTGATT GCTAGATGAC 229,913 0.0224
17 AGGCTTGATT GCTAGATGAC 223,097 0.0217
18 AGGCCTGATT GCTAGATGAC 222,965 0.0217
19 AGGGCTGATT GCTAGATGAC 206,864 0.0201
20 AGGCTGATTC CTAGATGACA 199,591 0.0194
21 AGGCTGATTC GCTAAGATGA 166,701 0.0162
22 AGGCTGATTC GCTAGAATGA 165,868 0.0162
23 AGGCTGATTC GGCTAGATGA 157,066 0.0153
24 AGGCTGATTC GCTAGGATGA 154,519 0.0150
25 AGGCTGATTC GCTAGATGGA 145,900 0.0142
26 AGGCTGGATT GCTAGATGAC 121,499 0.0118
27 AAGGCTGATT GCTAGATGAC 87,212 0.0085
28 AGGCTGAATT GCTAGATGAC 86,307 0.0084
29 AGCTGATTCC GCTAGATGAC 59,786 0.0058
30 AGGCTGATTC GCTTAGATGA 47,516 0.0046
43.0
Mean Q
98.5%
Q30
90.7%
Q40
N/A
Reads eliminated
28.0
Mean read length
N/A
Trim type
N/A
Min read length